Hey Gordon, All the transcripts you list have been suppressed according to NCBI.
http://www.ncbi.nlm.nih.gov/nuccore Unfortunately you've run into a gap between when we updated the refGene table on our public site (which happens every day), and when that tabled got dumped to our downloads site (which happens at most every weekend). We regret this discrepancy and are looking into ways to address it. Since the refSeq table is rather small, you can download it through the table browser, which will give you the same data that the genome browser display is using. brian On Mon, Sep 19, 2011 at 5:12 PM, Assaf Gordon <[email protected]> wrote: > Hello, > > I found several RefSeq transcript identifiers that exist in the > "refGene.txt.gz" file, > but do not exist in the "refGene" table (using the genome table browser). > > The "refGene.txt.gz" was download today (file date is 11-Sep-2011, size > 4,184,410 md5sum fdcbb8106fc44db3aa2364d3345fa668) - > so it's the most recent version that I can find). > > The following transcripts appear in the refGene.txt.gz file, but are not > found in the refGene table browser: > NM_001001716 > NM_001002840 > NM_001013739 > (There are several more, not listed). > > Is there a way to reconcile this ? get the latest version as a file ? > > Thanks, > -gordon > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
