Hi Jaykar,
1. Go to the ENCODE cell types page and find the cell line you're
interested in (male/female is noted in the table):
http://genome.ucsc.edu/ENCODE/cellTypes.html
2. Then do a file search (http://genome.ucsc.edu/cgi-bin/hgFileSearch)
for that cell line using:
Data format: Alignment binary (bam)
Cell, tissue, DNA sample: and select the Cell line(s) you found in step 1.
Experiment (Assay) type: RnaSeq
That will give you a list of the available files we have.
Please let us know if you have any additional questions: [email protected]
-
Greg Roe
UCSC Genome Bioinformatics Group
On 9/19/11 12:15 PM, Nayeck, Jaykar (NIH/NICHD) [V] wrote:
> Hi my name is Jaykar Nayeck, and I was wondering if the UCSC genome browser
> has any female homo sapiens RNA seq-data that they would be willing to share
> with me (preferably in BAM and BAI format). If this is possible please let me
> know.
>
> Kind Regards,
> Jaykar Nayeck
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
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