Hello, I am finding problems in converting the coordinates of dbSNP134 from hg19 to hg18. I have downloaded the coordinates from NCBI and I converted them into a BED file. I use the original hg19ToHg18.over.chain. liftOver snps.hg19.bed hg19ToHg18.over.chain snps.hg18.bed unMapped The output file is always empty and all the coordinates have the tag "#Deleted in new" in unMapped. I have the same problem with a list of human genes in hg18 that I tried to map to hg19.
Can someone help? Thanks! Matteo _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
