Hi Katrina, Thanks for your response. Would like to ask you some additional questions as follows: 1.- Is there any plan to create the Modern Human Sequence and Neandertal Contigs tracks on hg 19?. 2.- Is there any plan to create the Denisova Assembly and Analysis Tracks on hg19?. What would be the process to get this done? 3.-Would like to know what is the difference between assembling (on hg 19) and lifting over (from hg18) the Modern Human Sequence and Neandertal (Denisova)Assembly and Analysis Tracks. 4.- What are the reasons for the differences between Human DNA variants when hg18 version is compared with the hg19 version. 5.- Who is accountable for ensuring the DNA sequences alignment for Modern Human, Neandertal and Denisova?. Thanks, Tomas
________________________________ From: Katrina Learned <[email protected] sc.edu> To: Tomas Lovera <[email protected]> Cc: "[email protected]" <[email protected]> Sent: Friday, September 30, 2011 8:53:41 AM Subject: Re: [Genome] Neandertal and Denisova Assembly and Analysis Tracks. Hi Tomas, Most of the Neandertal Assembly and Analysis tracks are available on hg19. The Modern Human Seq and Neandertal Contigs tracks are the only tracks from this group that are only available on hg18 and not on hg19. Most of the Neandertal tracks on hg19 were lifted over from hg18 and have a "18" icon next to their names; for more information on tracks we've lifted, see http://genome.ucsc.edu/goldenPath/help/hg18ToHg19LiftOver.html. To access these tracks on hg19, from the main browser page (http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19), scroll down to the "Neandertal Assembly and Analysis" group. The Denisova Assembly and Analysis tracks are not available on hg19. Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group On 9/29/11 11:45 PM, Tomas Lovera wrote: > Dear, > Can you please let me know whether the Neandertal and Denisova Assemblies >and Analysis tracks are also available as part of the February 2009 GRCh37/hg >19 reference sequence? To access the Neandertal and Denisova Assemblies >and Analysis tracks information,please click in the follopwing links: > 1.- UCSC Genome and Bioinformatics Home Page > 2.- Neandertal > 3.- Neandertal Alleles in Human/ChimpCoding Non-synonymous Differences in > Human Lineage: ........ > 4.- All Neandertal Assembly and Analysis Tracks > 5.- Configure Tracks on UCSC Genome Browser > 6.- Neandertal Assembly and Analysis > 7.- Denisova Assembly and Analysis > Thanks, Tomas Lovera, > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
