Hi Alban, If you would like to create an over.chain file yourself, please see the following link for instructions: https://lists.soe.ucsc.edu/pipermail/genome/2010-January/020985.html
Let us know if you have any additional questions: [email protected] Regards, --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 10/19/2011 12:49 PM, Luvina Guruvadoo wrote: > Hi Alban, > > UCSC does not currently host SK1, and unfortunately, we cannot provide > liftOver files between species we do not display in the browser. > > Please contact us again at [email protected] if you have any further > questions. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > On 10/18/2011 9:32 AM, Alban Lermine wrote: >> Hi, >> >> I would like to convert coordinates from one Yeast Genome (SK1) to >> another (S288C). >> In order to do this, I will use the liftOver tool provided on your >> web site. >> >> But I can't found the over.chain file to run liftOver. >> >> Can you generate this file for me? >> >> Here are the 2 genomes: >> >> S288C: >> http://xfer.curie.fr/get/Lr1bdX5y7P1/S288C_reference_sequence_R64-1-1_20110203.validated.fasta >> >> >> >> SK1: >> http://xfer.curie.fr/get/Bzh3ti8HL6f/SK1_sequence_21022008.validated.fa >> >> My request is to convert SK1 coordinates into S288C coordinates. >> >> Thanks by advance, >> >> Best regards, >> >> Alban >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
