Hi Hiram, In the file danRer7.fa.gz, we have chromosome sequences for each chromosome.
Example: >chr1 TTCTTCTGGGGAAAGTCTGATTTGATTTATTTCCCTTttaagatcaatat tattagccccatgtgttgaagaacaaatctctctgttaaacagaaattgg gggggaaaataaacaggggggcaaataattctgactacaattgtatatat >chr2 ACACACTGATCCAGACAGTCTTTACTCTGCAATAATCCAGCAGTAGTCgt gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCGTC TCCTCGGGTCAGGCATCGGTGAGCTGCTCGCTTGCTCTGGTCCTCCTCTT >chr18 AGAACTGGGTTCCCGCCAGTAAACAGGCCGTTACGGTCTCCTACTTCTAC GACAGCGCACGCAACAGCTACCGCATCATCAGCGTAGACGGAACAAAGGT CAGACAGATACATGTGTACCTGTACGTGTGTGTGATAGAGTCAGAGTTAG >chrM ACGGCCGGCGACAATTTATATGTCAATGTTTTAGTAATTTACAATTAAGA CAGACATGCACTGTATTGATACATTAATCATACATAAAATGCATGCTCTA ATTTTTACATATGCATGTGCAAGCATATACATATGTGTGGATACACACGT Similarly there is no sequence for chromosome N (chrN). Thanks, Shravan Cognizant Support Analyst - Bio-Target | W: +91 44 3921 6565 | M: +91 (0) 98408 09224| -----Original Message----- From: Hiram Clawson [mailto:[email protected]] Sent: 09 November 2011 17:14 To: Chhogalal, Shravan (Cognizant) Cc: [email protected]; Kaliyamoorthi, Anjugam (Cognizant); Muthusamy, Murugesan (Cognizant) Subject: Re: [Genome] danRer7 for ZebraFish Zv9 Release Can you please clarify, what is chromosome N ? --Hiram Chhogalal, Shravan (Cognizant) wrote: > Hi Team, > > In the file downloaded from the location > ftp://hgdownload.cse.ucsc.edu/goldenPath/danRer7/bigZips/danRer7.fa.gz > > We do not have any data for chromosome N, can you please let us know the > reason why no data is available for chromosome N. > > Or is there no data for chromosome N for Zebrafish > > Thanks, Shravan > Cognizant Support Analyst - Bio-Target | W: +91 44 3921 6565 | M: +91 > (0) 98408 09224| _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
