Hello, Arjen.
You can retrieve this information from the Table Browser (from main page,
click on "Tables" on the top blue navigation bar). After selecting a clade,
genome, and assembly of your choice, set the following:
group: Genes and Gene Prediction Tracks
track: RefSeq Genes
table: refGene
region: if you want the whole genome, select "genome"; otherwise, specify a
region in the "position" field output format: selected fields from primary
and related tables output file: enter a file name to save your results to a
file, or leave blank to display results in the browser
Click 'get output'. On the following page, select the appropriate fields
('name' for example) then click 'get output'.
For more information on how to use the Table Browser, please refer to our
help pages:
http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html
Feel free to contact us again at [email protected] if you have any further
questions.
---
Steve Heitner
UCSC Genome Bioinformatics Group
-----Original Message-----
From: [email protected] [mailto:[email protected]] On
Behalf Of [email protected]
Sent: Wednesday, November 09, 2011 2:55 AM
To: [email protected]
Subject: [Genome] Non-dog RefSeq Genes
Hi,
For the project that I'm working on, I need a list of all dog refseq genes.
The only problem is that there are only a few genes annotated in the dog
genome. Therefore I would like to use the (preferably human) non-dog refseq
genes which are shown in the genome browser. So my questions is from where I
could download this data?
Looking forward to hear from you. Thank you.
Best regards,
Arjen Henkes
Het UMC St Radboud staat geregistreerd bij de Kamer van Koophandel in het
handelsregister onder nummer 41055629.
The Radboud University Nijmegen Medical Centre is listed in the Commercial
Register of the Chamber of Commerce under file number 41055629.
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
