Hello, Arjen. One of our other engineers looked at your question and I may have misunderstood what you are trying to accomplish. I gave you instructions on how to obtain all of the human RefSeq genes. I think you may be looking for human RefSeq genes that align to the dog genome. If this is the case, please follow the instructions below.
Go to the Table Browser and select the following: Clade: Mammal Genome: Dog Assembly: May 2005 (Broad/canFam2) Group: Genes and Gene Prediction Tracks Track: Other RefSeq Table: xenoRefGene Region: if you want the whole genome, select "genome"; otherwise, specify a region in the "position" field Output format: selected fields from primary and related tables Output file: enter a file name to save your results to a file, or leave blank to display results in the browser Now, perform the following steps: 1. Next to "filter," click the "create" button 2. Scroll down to "Linked Tables" and check the canFam2.gbCdnaInfo checkbox 3. At the bottom of the page, click the "Allow Filtering Using Fields in Checked Tables" button 4. Scroll down to "Linked Tables" again and now check the canFam2.organism checkbox 5. Click the " Allow Filtering Using Fields in Checked Tables" button again 6. In the "canFam2.organism based filters" section, ensure that you set the following -> name does match "Homo sapiens" (include the quotes) 7. Click the "submit" button 8. Click the "get output" button 9. Check the checkboxes of the fields you would like to see in your output 10. Click the "get output" button which should generate your output Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of [email protected] Sent: Wednesday, November 09, 2011 2:55 AM To: [email protected] Subject: [Genome] Non-dog RefSeq Genes Hi, For the project that I'm working on, I need a list of all dog refseq genes. The only problem is that there are only a few genes annotated in the dog genome. Therefore I would like to use the (preferably human) non-dog refseq genes which are shown in the genome browser. So my questions is from where I could download this data? Looking forward to hear from you. Thank you. Best regards, Arjen Henkes Het UMC St Radboud staat geregistreerd bij de Kamer van Koophandel in het handelsregister onder nummer 41055629. The Radboud University Nijmegen Medical Centre is listed in the Commercial Register of the Chamber of Commerce under file number 41055629. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
