Hi,
We are trying to view a BAM file at UCSC, created by Bowtie followed by
Samtools. The file is visible on the web at
http://noble.gs.washington.edu/~ymao/proj/s_6_1.bam
However, when we upload this to the mm9 genome in the custom track page,
using this track line
track type=bam db=mm9
bigDataUrl=http://noble.gs.washington.edu/~ymao/proj/s_6_1.bam
we don't actually see any data in the browser. When we instead upload
the file directly, using the "Browse..."/"Upload" option, we get an
error message that says "*Error Can't read file: s_6_1.bam*".
Since BAM is not text-based, it's not easy to figure out how to debug
this. Can anyone help us figure out what's wrong with our file?
Bill
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