Hi Jing, It appears http://helix.nih.gov is working, so you may want to contact their system administrator to see if they can serve this BAM via https.
Contact us at [email protected] if you have additional questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group <https://helix.nih.gov/> On 12/1/2011 9:50 AM, Huang, Jing (NIH/NCI) [E] wrote: > Dear UCSC team: > > I am trying to find a place to host my data. Would you please let me > know that UCSC browser could accept data from a sftp site? NIH does not want > to use ftp because of the security purpose. Thank you. > > Best, > Jing > > -----Original Message----- > From: Luvina Guruvadoo [mailto:[email protected]] > Sent: Tuesday, November 01, 2011 1:42 PM > To: Huang, Jing (NIH/NCI) [E] > Cc: [email protected] > Subject: Re: [Genome] FW: bam file upload > > Hi Jing, > > I was able to upload your bam file without any errors. If file size is > not the issue, it may be a transient problem with the ftp server; it is > not a software problem on our end. You could try to use another ftp or > http server to serve your data. > > Please contact us again at [email protected] if you have any further > questions. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > On 10/30/2011 10:54 AM, Huang, Jing (NIH/NCI) [E] wrote: >> Dear Vanessa: >> I tried it again and this time it does not work. I feel that this >> problem is intermittent. Sometimes, it works. Sometimes, it doesn't. I >> thought it is because my file is too big. But even tried smaller .bam file, >> it still gives the same problem. >> Thanks. >> >> Best, >> Jing >> >> From: Vanessa Kirkup Swing [mailto:[email protected]] >> Sent: Thursday, October 27, 2011 2:29 PM >> To: Huang, Jing (NIH/NCI) [E] >> Cc:[email protected] >> Subject: Re: [Genome] bam file upload >> >> Hi Jing, >> >> We tried accessing your files and were able to do so. Can you try doing it >> again? Does it always fail or does if fail intermittently? Please send your >> response [email protected]<mailto:[email protected]> so our entire >> team can help. Thanks! >> >> Vanessa Kirkup Swing >> UCSC Genome Bioinformatics Group >> >> ---------- Forwarded message ---------- >> From: Huang, Jing (NIH/NCI) >> [E]<[email protected]<mailto:[email protected]>> >> Date: Thu, Oct 27, 2011 at 6:46 AM >> Subject: [Genome] bam file upload >> To: >> "[email protected]<mailto:[email protected]>"<[email protected]<mailto:[email protected]>> >> >> >> Dear Luvina: >> Thank you for your information. I tried several times and it still >> gives me the same error message: >> >> Error Can't access L.bam's bigDataUrlftp://helix.nih.gov/pub/huangj3/L.bam >> and/or the associated index fileftp://helix.nih.gov/pub/huangj3/L.bam.bai: >> ftp server error on cmd=[] response=[421 Service not available. ] ftp server >> error on cmd=[USER anonymous ] response=[] >> >> I can access the ftp site, it is working. No sure what is problem? >> Thank you. >> >> Best, >> Jing >> >> P.S. Today, it works. I can upload the bam file. >> >> >> Jing Huang, PhD >> Head, Cancer and Stem Cell Epigenetics >> Laboratory of Cancer Biology and Genetics >> Center for Cancer Research >> National Cancer Institute >> 37 Convent Dr. Building 37/Rm 3140A >> Bethesda, MD 20892 >> Tel: 301-496-2202<tel:301-496-2202> >> http://ccr.cancer.gov/staff/staff.asp?profileid=14704 >> >> >> _______________________________________________ >> Genome maillist [email protected]<mailto:[email protected]> >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> _______________________________________________ >> Genome maillist [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
