Hi Abigail, The tree that was used in the Saccharomyces 7-way multiple alignment is:
http://hgdownload.cse.ucsc.edu/goldenPath/sacCer3/multiz7way/7way.nh (which can be found by going to the details page for the Conservation track, http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=sacCer3&g=multiz7way, and clicking on the link for "Multiz alignments (MAF format), and phylogenetic trees"). The tree that was used does not include branch lengths. If you have further questions, please contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 12/2/11 9:31 AM, Abigail Reyes wrote: > Hi, > > I need a Saccharomyces species tree with the branch lengths in Newick > format that was used in the 7-way multiple alignments. Is that available on > the UCSC Genome Browser page? If so, can you provide the link to the data > file? And if it is not available, can you provide me with this information? > > Thank you, > Abigail > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
