Angie, Made some progress tracking the error with tabix down; used fresh downloads of the tabix package and the patch file. No errors during the patching process, output is below along with the result checking afterwards....
# patch -p1 < Knetfile_hooks_tabix-0.2.5.patch patching file Makefile patching file bgzf.c patching file bgzf.h patching file bgzip.c patching file index.c patching file knetfile.c patching file knetfile.h patching file main.c # grep ti_ bgzf.h | wc -l 8 # grep ti_ bgzf.h BGZF* ti_bgzf_fdopen(int fd, const char* __restrict mode); BGZF* ti_bgzf_open(const char* path, const char* __restrict mode); int ti_bgzf_close(BGZF* fp); int ti_bgzf_read(BGZF* fp, void* data, int length); int ti_bgzf_write(BGZF* fp, const void* data, int length); int64_t ti_bgzf_seek(BGZF* fp, int64_t pos, int where); void ti_bgzf_set_cache_size(BGZF *fp, int cache_size); int ti_bgzf_check_EOF(BGZF *fp); Mahmud -- Mahmud Siddiqi Carnegie Institution/Embryology _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
