Hi Mahmud, Thanks for your patience and assistance with tracking this down, and my apologies -- the patch file was outdated. It is now up-to-date:
http://genomewiki.ucsc.edu/images/e/e8/Knetfile_hooks_tabix-0.2.5.patch If you have recently viewed this in your web browser, Shift+Reload might be required to see the update instead of a cached version. Sorry again for the inconvenience. If you encounter any more trouble, please let us know at [email protected] or at our list specifically for mirror site issues, [email protected]. Angie ----- Original Message ----- > From: "Mahmud Siddiqi" <[email protected]> > To: [email protected] > Cc: [email protected] > Sent: Wednesday, December 7, 2011 8:34:52 AM > Subject: Errors compiling from source, function ti_bgzf_tell > Angie, > > Made some progress tracking the error with tabix down; used fresh > downloads of the tabix package and the patch file. > No errors during the patching process, output is below along with the > result checking afterwards.... > > # patch -p1 < Knetfile_hooks_tabix-0.2.5.patch > patching file Makefile > patching file bgzf.c > patching file bgzf.h > patching file bgzip.c > patching file index.c > patching file knetfile.c > patching file knetfile.h > patching file main.c > > # grep ti_ bgzf.h | wc -l > 8 > > # grep ti_ bgzf.h > BGZF* ti_bgzf_fdopen(int fd, const char* __restrict mode); > BGZF* ti_bgzf_open(const char* path, const char* __restrict mode); > int ti_bgzf_close(BGZF* fp); > int ti_bgzf_read(BGZF* fp, void* data, int length); > int ti_bgzf_write(BGZF* fp, const void* data, int length); > int64_t ti_bgzf_seek(BGZF* fp, int64_t pos, int where); > void ti_bgzf_set_cache_size(BGZF *fp, int cache_size); > int ti_bgzf_check_EOF(BGZF *fp); > > > Mahmud > > -- > Mahmud Siddiqi > Carnegie Institution/Embryology _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
