Hello, Eva. Sorry for the delay in response. The easiest solution is to use our Table Browser. If you are unfamiliar with the Table Browser, please check out the User's Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html.
To obtain a list, follow these steps: 1. From http://genome.ucsc.edu, click "Tables" in the blue navigation bar at the top of the screen. 2. Set the following: (let's assume you're interested in the latest human assembly) Clade: Mammal Genome: Human Assembly: Feb. 2009 (GRCh37/hg19) Group: Genes and Gene Prediction Tracks Track: For this example, we'll use UCSC Genes. You can read more about which gene track is most appropriate for you by reading their description pages - accessible by clicking on the grey bar to the left of the main display or by clicking on the track title above the pulldown menu. Table: knownGene Region: Select "genome" for the entire genome. Select "position" to specify a single chromosome or region of a chromosome. You can click the "define regions" button to specify multiple regions or click the "paste list" or "upload list" buttons to specify a list of RefSeq IDs. Output format: Selected fields from primary and related tables Output file: Leave blank to see your output on the screen or specify a file name. 3. Click the "get output" button 4. Select the fields you are interested in. 5. Click the "get output" button to obtain your results. You can experiment to find the set of options that works best for you. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Eva Wohlleber Sent: Wednesday, December 07, 2011 3:11 AM To: [email protected] Subject: [Genome] genelist Dear ladies and gentlemen, is it possible to export genes of a region in form of a table / list? Thanks, Eva Wohlleber -- Dr. med. Eva Wohlleber Institut für Humangenetik Biomedizinisches Zentrum Universitätsklinikum Bonn Sigmund-Freud-Str. 25 D-53105 Bonn Tel.: +49 (0)228/287 51016 Fax: +49 (0)228/287 51011 E-mail: [email protected] http://www.humangenetik.uni-bonn.de _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
