Hi Brent, Please see this previously answered question for more information: https://lists.soe.ucsc.edu/pipermail/genome/2011-October/027374.html
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 1/12/2012 8:14 AM, Brent Pedersen wrote: > Hi, > > The short question is: what's the best way to display my microarray > data (2.1 million probes * 20 individuals) > in UCSC. I can do this as bed15 format on a subset of the probes, but > so far not as bigBed. > > The longer explanation is: > following these instructions: > http://genomewiki.ucsc.edu/index.php/Microarray_track > I am able to display a subset of my data as a microarray track in a bed15. > > I then tried bedToBigBed on that bed15. It runs successfully and > creates a bigbed file. > When I try to display that with a track header like: > track type="array" bigDataUrl="http://example.com/ivy.15.bb"; > visibility="full" expScale=0.5 expStep=0.1 > expNames=0,1,2,3,4,5,6,7,8,9 name="Microarray" description="ma" > it submits and then shows a blank page in both the normal browser and > the -preview version. > > if I change type to "bigBed", then, as expected it displays as a > bed-track, rather than as a microarray > track. Is there a way to display this type of file as microarray in > the browser other than to keep it as > text-based bed15? > thanks, > -Brent > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
