Hi, The short question is: what's the best way to display my microarray data (2.1 million probes * 20 individuals) in UCSC. I can do this as bed15 format on a subset of the probes, but so far not as bigBed.
The longer explanation is: following these instructions: http://genomewiki.ucsc.edu/index.php/Microarray_track I am able to display a subset of my data as a microarray track in a bed15. I then tried bedToBigBed on that bed15. It runs successfully and creates a bigbed file. When I try to display that with a track header like: track type="array" bigDataUrl="http://example.com/ivy.15.bb"; visibility="full" expScale=0.5 expStep=0.1 expNames=0,1,2,3,4,5,6,7,8,9 name="Microarray" description="ma" it submits and then shows a blank page in both the normal browser and the -preview version. if I change type to "bigBed", then, as expected it displays as a bed-track, rather than as a microarray track. Is there a way to display this type of file as microarray in the browser other than to keep it as text-based bed15? thanks, -Brent _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
