Hi BCW, Liftover should work with a BED3 file. Can you send me some sample coordinates you were trying to convert?
Reply to: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 2/27/12 8:01 AM, Pulakanti, Kirthi wrote: > Hello > > I have used the liftover tool before and it worked fine. I have a file (bed > file) with only first three columns and I want change the coordinates from > mm8 to mm9. I got conversions failed on all the records. What wopuld be the > reason for this. Do I have to provide all 12 columns information. If I do not > have the information about the other columns, Can I still convert? > > Thanks for your time. > > BCW > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
