Hello, Preeti. If you haven't performed SQL operations on the Browser database before, you may also want to check out the FAQ at http://genome.ucsc.edu/FAQ/FAQdownloads.html#download29.
Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Hiram Clawson Sent: Wednesday, March 21, 2012 2:43 PM To: Preeti Cc: [email protected]; Orly Alter Subject: Re: [Genome] gene annotation through programs Good Afternoon Preeti: You can perform this query with MySQL operations. Please note the example queries: http://genomewiki.ucsc.edu/index.php/Finding_nearby_genes You can adjust the parameters in these queries to extract data from an interval. --Hiram ----- Original Message ----- From: "Preeti" <[email protected]> To: [email protected] Cc: "Orly Alter" <[email protected]> Sent: Wednesday, March 21, 2012 2:22:02 PM Subject: [Genome] gene annotation through programs Hi, I know the chromosome number, start and stop locations on the human genome. I would like to know if there are any genes in that location and if yes, I would like to get the gene symbol. I can use the genome browser to view this information, however, I need to do this for about a thousand different cases and doing it manually is not possible. Could you please help me in this regard? Is there any webservice that I can access through my program to get this info ? Thank you for your help! Preeti _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
