Hi Luvina, Used sudo chmod +x liftOver to add executable permission ./liftOver command then ran executable Then moved liftOver to /bin and no longer needed the ./ to drive executable
Thanks again, bill On 4/6/12 1:30 PM, "William Biggs" <[email protected]> wrote: >Hi Luvina, > >That did itŠthanks! > >Best, >bill > > >On 4/6/12 1:00 PM, "Luvina Guruvadoo" <[email protected]> wrote: > >>Hi Bill, >> >>This previously answered question might help: >>https://lists.soe.ucsc.edu/pipermail/genome/2011-March/025290.html >> >>Let us know if you are still experiencing problems: [email protected] >> >>--- >>Luvina Guruvadoo >>UCSC Genome Bioinformatics Group >> >> >>On 4/5/2012 4:04 PM, Bill Biggs wrote: >>> Hi Team UCSC Genome Center, >>> >>> In an effort to translate hg19 annotations to hg18, GCRh37, and GCRh36 >>>genomes I recently downloaded the liftOver executable from the UCSC GC >>>ftp site. >>> Already have the chain files. >>> >>> The downloaded tool does not appear to be an executable (-rw-r--r--)Š >>> Then used sudo chmod to add executable permissions (-rwxr-xr-x)Š >>> Continue to get liftOver: command not found. >>> >>> Found this for both Linux and Mac executables. >>> >>> Sorry for what must be a mundane question. >>> >>> Thanks, >>> bill biggs >>> >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >>_______________________________________________ >>Genome maillist - [email protected] >>https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
