Hello Ori, The percent identity is actually calculated at run-time (not stored in a table) using the PSL record stored in the xenoRefSeqAli table. The process for doing this is described in this FAQ:
http://genome.ucsc.edu/FAQ/FAQblat.html#blat4 If you want to try this yourself you might also need the information here about downloading and running blat: http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 4/18/12 6:45 AM, Ori Klipstein wrote: > Dear Madam/Sir, > > I’m using quite often your “tables” tab on the web site and I find very > useful. Usually, I find all the graphic data pretty easily in the right > table. Alas, I’ve encountered a problem locating the following data: > I’m looking at the horse genome and into the xenorefseq data. When I find for > example a putative human gene (which comes from xenorefseq) I click it and I > can see the Identity % between the query and the actual sequence in the horse > assembly. > > (for example see the next link: > http://genome.ucsc.edu/cgi-bin/hgc?hgsid=259795737&o=1480702&t=1851019&g=xenoRefGene&i=NM_001206996 > > I can find all the data shown in some of the tables through the “tables”tab, > except for the Identity %. > Could you please direct me to the right location of this data in the tables? > > Thank you and best regards, > Ori. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
