Hello, Peng. You did not find AF191547 in the Browser because http://www.ncbi.nlm.nih.gov/nucleotide/AF191547 lists this as DNA and we only align Genbank RNA.
I also believe that part of the problem is that the instructions you referenced at http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/10530 mention the lincRNA RNA-Seq Reads track, but that is a human track. The gene you referenced is a mouse gene and the mouse genome does not have a lincRNA RNA-Seq Reads track. The NCBI page lists this as the PARP2 locus. You can perform a Browser search on PARP2 to identify your track of interest and then obtain the desired information from the Table Browser by doing the following: 1. From http://genome.ucsc.edu, click "Genomes" in the blue navigation bar at the top of the screen. 2. Set "clade", "genome" and "assembly" to "Mammal", "Mouse" and "July 2007 (NCBI37/mm9)". 3. In the "position or search term" box, enter "PARP2" and click the "submit" button. 4. Several results will appear on the results page along with the track name they belong to. Identify the result you are interested in and use the track name to obtain the corresponding information from the Table Browser. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Peng Yu Sent: Wednesday, April 25, 2012 10:29 AM To: [email protected] Subject: [Genome] Is genes like AF191547 available in the browser? Hi, It seems that this gene is not available in the browser. http://www.ncbi.nlm.nih.gov/nucleotide/AF191547 It is a lincRNA according to. http://www.noncode.org/NONCODERv3/browseLncRNAs.php I am not able to follow the following instruction how to get lincRNA table. http://permalink.gmane.org/gmane.science.biology.ucscgenome.general/10530 Could anybody let me know how to get the lincRNA table? And what is the origin if the lincRNA table and why AF191547 is not available in the browser? -- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
