Hi, I'm trying to use the mouse dbSNP file provided for the mm9 reference and I'm having some issues interpreting the data.
For example: 756 chr1 22488676 22488711 rs32326997 0 + AGTCAATCTATCAATCAATCAATCAATCAATCAAT AGTCAATCTATCAATCAATCAATCAATCAATCAAT A/G genomic single unknown 0 0 intron rangeSubstitution 1 In this region I'm interpreting the ref Allele to be AGTCAATCTATCAATCAATCAATCAATCAATCAAT and the alt alleles to be A/G However the genotype xml files from NBCI version of the dbSNP file indicates something like this: SnpInfo rsId="32326997" observed="A/G" I'd appreciate if you could validate my assumptions regarding the interpretation of the allele fields. Thanks, Vivek. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
