Hello, We have not yet released a browser for the canFam3 assembly but we have enabled the liftOver tool to convert coordinates from canFam2 to canFam3 on our test site here:
http://genome-test.cse.ucsc.edu/cgi-bin/hgLiftOver Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 5/2/12 9:38 AM, Violeta Muñoz Fuentes wrote: > Hi, > > I have previously used the very useful Batch Coordinate Conversion > (liftOver) utility at the USCS Genome Browser website to convert genome > coordinates between assemblies. I see CanFam1 and CanFam2 are available, > but not CanFam3. > > I would like to use CanFam3 for aligning/mapping (it can be found at the > NCBI site), but I have CanFam2 coordinates for the regions of interest. > Is there a way to convert between the two? > > Best regards, > > -- > > Dr Violeta Munoz-Fuentes > > Estacion Biologica de Doñana - CSIC > Avda. Americo Vespucio s/n > 41092 Sevilla > Spain > Tel. (W) +34 95 44 66 700 ext. 1082 > Tel. (M) +34 670 89 1478 > http://www.ebd.csic.es/ > > Conservation and Evolutionary Genetics Group: > http://www.consevol.org/ > > [email protected] > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
