Thank you very much. Best regards,
Violeta Muñoz-Fuentes On 15/05/2012 00:56, Pauline Fujita wrote: > Hello, > > We have not yet released a browser for the canFam3 assembly but we have > enabled the liftOver tool to convert coordinates from canFam2 to canFam3 > on our test site here: > > http://genome-test.cse.ucsc.edu/cgi-bin/hgLiftOver > > > Best regards, > > Pauline Fujita > UCSC Genome Bioinformatics Group > http://genome.ucsc.edu > > > > > On 5/2/12 9:38 AM, Violeta Muñoz Fuentes wrote: >> Hi, >> >> I have previously used the very useful Batch Coordinate Conversion >> (liftOver) utility at the USCS Genome Browser website to convert genome >> coordinates between assemblies. I see CanFam1 and CanFam2 are available, >> but not CanFam3. >> >> I would like to use CanFam3 for aligning/mapping (it can be found at the >> NCBI site), but I have CanFam2 coordinates for the regions of interest. >> Is there a way to convert between the two? >> >> Best regards, >> >> -- >> >> Dr Violeta Munoz-Fuentes >> >> Estacion Biologica de Doñana - CSIC >> Avda. Americo Vespucio s/n >> 41092 Sevilla >> Spain >> Tel. (W) +34 95 44 66 700 ext. 1082 >> Tel. (M) +34 670 89 1478 >> http://www.ebd.csic.es/ >> >> Conservation and Evolutionary Genetics Group: >> http://www.consevol.org/ >> >> [email protected] >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
