Hi Peng, Thank you for bringing this to our attention. We plan to have this fixed by the next UCSC Genes release.
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 5/17/2012 2:29 PM, Peng Yu wrote: > Hi, > > I found the following mm9 knownGene which has incorrectly number of > exons. Exon number 3 and 4 actually should belong to the same exon. > > This is a trivial bug which should have been caught in the first > place. And I'm a little surprised that it is not been caught/fixed > before. I suspect that all knownGene tables (not just mm9) should have > this problem if they are generated using the same code base. > > Is there anybody going to fix this bug for all the knownGene tables? > > +------------+-------+--------+----------+----------+----------+----------+-----------+-----------------------------------------------------------------+-----------------------------------------------------------------+-----------+------------+ > | name | chrom | strand | txStart | txEnd | cdsStart | > cdsEnd | exonCount | exonStarts > | exonEnds > | proteinID | alignID | > +------------+-------+--------+----------+----------+----------+----------+-----------+-----------------------------------------------------------------+-----------------------------------------------------------------+-----------+------------+ > | uc007epg.1 | chr10 | + | 21893681 | 22093945 | 21894125 | > 21901897 | 7 | > 21893681,21894098,21900423,21900587,21900930,21901751,22093582, | > 21893772,21894216,21900587,21900678,21901194,21901921,22093945, | > NP_033044 | uc007epg.1 | > +------------+-------+--------+----------+----------+----------+----------+-----------+-----------------------------------------------------------------+-----------------------------------------------------------------+-----------+------------+ > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
