Hello again, Niedzica, You may also find it helpful to turn on the GRC Incident track, located in the Mapping and Sequencing track group. The GRC Incident track indicates locations in the genome assembly where assembly problems have been noted or resolved. Item HG-1049 at the beginning of chr17 explains that it is known that the telomere has not been defined. The details page includes a link to the GRC report:
http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=HG%2D1049 -- Brooke Rhead UCSC Genome Bioinformatics Group On 5/25/12 4:10 PM, Brooke Rhead wrote: > Hi Niedzica, > > We display the official human assembly from the Genome Reference > Consortium, which does not include any annotated telomeres on chr17. You > might be able to find more information about that on their site: > http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/index.shtml > > > If you have further questions about the Genome Browser, please contact > us again at [email protected]. > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > On 5/25/12 5:39 AM, Niedzica Camacho wrote: >> Hello, >> >> I downloaded a table with the telomeric and centromeric regions of >> the human genome from the hg19 database. I used the gap table in the >> Table Browser. The telomeric regions for chr17 are not there. I was >> wondering if you could give me the coordinates or if there's a >> special reason for them not to be there? >> >> I would really appreciate your help. >> >> Kind regards, >> >> >> Niedzica >> >> The Institute of Cancer Research: Royal Cancer Hospital, a charitable >> Company Limited by Guarantee, Registered in England under Company No. >> 534147 with its Registered Office at 123 Old Brompton Road, London >> SW7 3RP. >> >> This e-mail message is confidential and for use by the addressee >> only. If the message is received by anyone other than the addressee, >> please return the message to the sender by replying to it and then >> delete the message from your computer and network. >> >> _______________________________________________ Genome maillist - >> [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
