Hi Brooke/Hiram, Sorry, we were trying to upload the Bigbed using "choose File" option. We will try the another approach which you have suggested.
Thanks, Harish On Thu, Jun 7, 2012 at 5:17 PM, Brooke Rhead <[email protected]> wrote: > Hi Harish, > > I would like to add to Hiram's answer. There is no need to upload bigBed > files to our servers. Instead you need to host them on your own web > server, and then point to the location of the file with the "bigDataUrl=" > setting in the track line. So, rather than hitting the "Choose File" > button where it says "Paste URLs or data:" on the custom track page, you > will put a line that looks something like this into the text box: > > track type=bigBed name="My Big Bed" description="A Graph of Data from My > Lab" > bigDataUrl=http://myorg.edu/**mylab/myBigBed.bb<http://myorg.edu/mylab/myBigBed.bb> > > Once you submit that line, the Genome Browser will be able to read and > display the data from your file for whatever position you happen to be > viewing in the browser. > > I hope this helps. If you have further questions, please contact us again > at [email protected]. > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > > On 6/7/12 10:14 AM, Hiram Clawson wrote: > >> Good Morning Harish: >> >> What do you mean 'upload a bigBed file' ? There isn't any 'upload' >> function >> for bigBed files. How do you submit a bigBed file for 'upload' and what >> error do you see ? Please note bigBed track usage instructions: >> >> http://genome.ucsc.edu/**goldenPath/help/bigBed.html<http://genome.ucsc.edu/goldenPath/help/bigBed.html> >> >> --Hiram >> >> >> Harish B wrote: >> >>> Hi, >>> >>> We are trying to upload a bigBed format file, which is 2 GB. But the >>> upload >>> fails. Is this due to network time out? or is there a limitation defined? >>> >>> Kindly reply. >>> >>> Thanks, >>> Harish >>> >> ______________________________**_________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/**mailman/listinfo/genome<https://lists.soe.ucsc.edu/mailman/listinfo/genome> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
