Dear Sir/Madam, I want to download all transcription factors and their binding sites from ENCODE.
Is the file "wgEncodeRegTfbsClusteredV2. bed.gz" in the following link the correct one to download? http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeRegTfbsClustered/ If so, what are the columns in the .bed file? How were the binding site peaks called? Were they all called by same algorithm or by the original papers published? What are the broadpeak and narrowpeak files in the link for HAIB TFBS and SYDH TFBS etc. on page http://genome.ucsc.edu/ENCODE/downloads.html? Thank you! Best, Kaida _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
