Good Morning Tom:

You can test this directly in the genome browser.
Go to the position: chrY
Turn on the Ensembl gene track and the PAR track.
Note the absence of items in the Ensembl gene track
in the PAR regions.

--Hiram

wangdp wrote:
> Dear Dr. Clawson,
> 
> Thanks for your reply.
> 
> I have been aware of the file "ensGene.txt" in the ftp of UCSC. But I don't 
> confirm if the genes in the shared regions between X and Y chromosomes are 
> annotated "twice" (count two genes)?
> 
> Could please help me clarify these?
> 
> Many thanks and best wishes,
> 
> Sincerely,
> 
> Tom
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