Hello, Anish. This is exactly what our Table Browser was designed for. If you're unfamiliar with the Table Browser, please see the User's Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html.
The following is an example of how to obtain information from the UCSC Genes track in hg19. 1. From http://genome.ucsc.edu, select "Tables" from the blue navigation bar at the top of the screen. 2. Select the following options: Clade: Mammal Genome: Human Assembly: Feb. 2009 (GRCh37/hg19) Group: Genes and Gene Prediction Tracks Track: UCSC Genes Table: knownGene Region: Select either "genome" for the entire genome or specify a single locus in the "position" box. You can also specify multiple loci by clicking the "define regions" button. Output format: Select "all fields from selected table" to list all fields in your output. You can also streamline your output by selecting "selected fields from primary and related tables". 3. Click the "get output" button. If you selected "selected fields from primary and related tables" in step 2, you will be presented with an additional screen that allows you to select which fields you want to view in your output. You can experiment to see which options work best with your needs. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Anish Bhaswanth Chakka Sent: Tuesday, June 12, 2012 10:42 AM To: [email protected] Subject: [Genome] Question - List of genes in a loci Hi, I would like to get a list of genes available for a particular loci in humans. When I enter the gene loci in genome browser, I can get an image showing the location of all the genes along the loci. But, is there a way to get the results (list of genes) in the form of text? Thanks, Anish. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
