commit: 972611e7e3914af7edbdddf23f66f3db740c03ea
Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Sun Jan 26 14:23:09 2025 +0000
Commit: Nowa Ammerlaan <nowa <AT> gentoo <DOT> org>
CommitDate: Thu Feb 6 13:54:31 2025 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=972611e7
sci-biology/deeptools: version bump 3.5.6, add tests
Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com>
Signed-off-by: Nowa Ammerlaan <nowa <AT> gentoo.org>
sci-biology/deeptools/deeptools-3.5.6.ebuild | 35 ++++++++++++++++++++++
.../files/deeptools-3.5.6-add-build-backend.patch | 12 ++++++++
2 files changed, 47 insertions(+)
diff --git a/sci-biology/deeptools/deeptools-3.5.6.ebuild
b/sci-biology/deeptools/deeptools-3.5.6.ebuild
new file mode 100644
index 000000000..32a4ca508
--- /dev/null
+++ b/sci-biology/deeptools/deeptools-3.5.6.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{11..12} )
+
+inherit distutils-r1
+
+DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert
BAM to bigWig"
+HOMEPAGE="https://github.com/deeptools/deepTools";
+SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz ->
${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+
+RDEPEND="
+ >=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}]
+ >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}]
+ >=dev-python/numpydoc-0.5[${PYTHON_USEDEP}]
+ >=dev-python/scipy-0.17.0[${PYTHON_USEDEP}]
+ dev-python/plotly[${PYTHON_USEDEP}]
+ >=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}]
+ >=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}]
+ >=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}]
+ >=dev-python/matplotlib-3.5.0[${PYTHON_USEDEP}]
+"
+
+S="${WORKDIR}/deepTools-${PV}"
+PATCHES=( "${FILESDIR}"/${P}-add-build-backend.patch )
+
+distutils_enable_sphinx docs dev-python/sphinx-rtd-theme
dev-python/sphinx-argparse
+distutils_enable_tests pytest
diff --git
a/sci-biology/deeptools/files/deeptools-3.5.6-add-build-backend.patch
b/sci-biology/deeptools/files/deeptools-3.5.6-add-build-backend.patch
new file mode 100644
index 000000000..cd001df15
--- /dev/null
+++ b/sci-biology/deeptools/files/deeptools-3.5.6-add-build-backend.patch
@@ -0,0 +1,12 @@
+diff --git a/pyproject.toml b/pyproject.toml
+index 2072ec1f52..9b28626680 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -2,6 +2,7 @@
+ requires = [
+ "setuptools"
+ ]
++build-backend = "setuptools.build_meta"
+
+ [project]
+ name = "deepTools"
