commit: 307567906911d448d5dda6f0c9fc6f857dcede71 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue May 2 12:44:02 2023 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue May 2 12:44:02 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=30756790
dev-python/tridesclous: treeclean Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> dev-python/tridesclous/metadata.xml | 16 ---- dev-python/tridesclous/tridesclous-1.6.4.ebuild | 101 ------------------------ dev-python/tridesclous/tridesclous-1.6.6.ebuild | 101 ------------------------ 3 files changed, 218 deletions(-) diff --git a/dev-python/tridesclous/metadata.xml b/dev-python/tridesclous/metadata.xml deleted file mode 100644 index 819340cd1..000000000 --- a/dev-python/tridesclous/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version='1.0' encoding='UTF-8'?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>gen...@chymera.eu</email> - <name>Horea Christian</name> - </maintainer> - <maintainer type="project"> - <email>s...@gentoo.org</email> - <name>Gentoo Science Project</name> - </maintainer> - <upstream> - <remote-id type="github">tridesclous/tridesclous</remote-id> - <remote-id type="pypi">tridesclous</remote-id> - </upstream> -</pkgmetadata> diff --git a/dev-python/tridesclous/tridesclous-1.6.4.ebuild b/dev-python/tridesclous/tridesclous-1.6.4.ebuild deleted file mode 100644 index a65c30298..000000000 --- a/dev-python/tridesclous/tridesclous-1.6.4.ebuild +++ /dev/null @@ -1,101 +0,0 @@ -# Copyright 2021-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..10} ) -DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 - -DESCRIPTION="offline/online spike sorting" -HOMEPAGE="https://github.com/tridesclous/tridesclous"; -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="gui test" - -RDEPEND=" - <dev-python/numpy-1.24.0[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] - dev-python/hdbscan[${PYTHON_USEDEP}] - dev-python/loky[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/neo[${PYTHON_USEDEP}] - dev-python/numba - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/seaborn[${PYTHON_USEDEP}] - dev-python/tqdm[${PYTHON_USEDEP}] - sci-libs/scikit-learn[${PYTHON_USEDEP}] - gui? ( - dev-python/PyQt5[${PYTHON_USEDEP}] - ) -" - -distutils_enable_tests pytest - -# Network sandboxing, this is sadly more than half the test suite :( -EPYTEST_DESELECT=( - tridesclous/tests/test_cleancluster.py::test_auto_split - tridesclous/tests/test_cleancluster.py::test_trash_not_aligned - tridesclous/tests/test_cleancluster.py::test_auto_merge - tridesclous/tests/test_cleancluster.py::test_trash_low_extremum - tridesclous/tests/test_cleancluster.py::test_trash_small_cluster - tridesclous/tests/test_cluster.py::test_sawchaincut - tridesclous/tests/test_cluster.py::test_pruningshears - tridesclous/tests/test_decomposition.py::test_all_decomposition - tridesclous/tests/test_export.py::test_export - tridesclous/tests/test_export.py::test_export_catalogue_spikes - tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor - tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry - tridesclous/tests/test_matplotlibplot.py::test_plot_signals - tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry - tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms - tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d - tridesclous/tests/test_metrics.py::test_all_metrics - tridesclous/tests/test_metrics.py::test_cluster_ratio - tridesclous/tests/test_peeler.py::test_peeler_geometry - tridesclous/tests/test_peeler.py::test_peeler_geometry_cl - tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue - tridesclous/tests/test_peeler.py::test_peeler_several_chunksize - tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor - tridesclous/tests/test_peeler.py::test_export_spikes - tridesclous/tests/test_report.py::test_summary_catalogue_clusters - tridesclous/tests/test_report.py::test_summary_noise - tridesclous/tests/test_report.py::test_summary_after_peeler_clusters - tridesclous/tests/test_report.py::test_generate_report - tridesclous/tests/test_autoparams.py::test_get_auto_params - tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor - tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue - tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude - tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor - tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection - tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps - tridesclous/tests/test_dataio.py::test_DataIO - tridesclous/tests/test_dataio.py::test_DataIO_probes - tridesclous/tests/test_datasets.py::test_download_dataset - tridesclous/tests/test_datasets.py::test_get_dataset - tridesclous/tests/test_datasource.py::test_RawDataSource - tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator - tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines - tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks - tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry - tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines - tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width - tridesclous/tests/test_tools.py::test_fix_prb_file_py2 -) - -python_test() { - local EPYTEST_IGNORE=( - tridesclous/online/tests/* - ) - if use !gui ; then - local EPYTEST_IGNORE+=( - tridesclous/gui/* - ) - fi - epytest -} diff --git a/dev-python/tridesclous/tridesclous-1.6.6.ebuild b/dev-python/tridesclous/tridesclous-1.6.6.ebuild deleted file mode 100644 index 13697e657..000000000 --- a/dev-python/tridesclous/tridesclous-1.6.6.ebuild +++ /dev/null @@ -1,101 +0,0 @@ -# Copyright 2021-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..10} ) -DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 - -DESCRIPTION="offline/online spike sorting" -HOMEPAGE="https://github.com/tridesclous/tridesclous"; -SRC_URI="https://github.com/tridesclous/tridesclous/archive/refs/tags/${PV}.tar.gz -> ${P}.gh.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="gui test" - -RDEPEND=" - <dev-python/numpy-1.24.0[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] - dev-python/hdbscan[${PYTHON_USEDEP}] - dev-python/loky[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/neo[${PYTHON_USEDEP}] - dev-python/numba - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/seaborn[${PYTHON_USEDEP}] - dev-python/tqdm[${PYTHON_USEDEP}] - sci-libs/scikit-learn[${PYTHON_USEDEP}] - gui? ( - dev-python/PyQt5[${PYTHON_USEDEP}] - ) -" - -distutils_enable_tests pytest - -# Network sandboxing, this is sadly more than half the test suite :( -EPYTEST_DESELECT=( - tridesclous/tests/test_cleancluster.py::test_auto_split - tridesclous/tests/test_cleancluster.py::test_trash_not_aligned - tridesclous/tests/test_cleancluster.py::test_auto_merge - tridesclous/tests/test_cleancluster.py::test_trash_low_extremum - tridesclous/tests/test_cleancluster.py::test_trash_small_cluster - tridesclous/tests/test_cluster.py::test_sawchaincut - tridesclous/tests/test_cluster.py::test_pruningshears - tridesclous/tests/test_decomposition.py::test_all_decomposition - tridesclous/tests/test_export.py::test_export - tridesclous/tests/test_export.py::test_export_catalogue_spikes - tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor - tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry - tridesclous/tests/test_matplotlibplot.py::test_plot_signals - tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry - tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms - tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d - tridesclous/tests/test_metrics.py::test_all_metrics - tridesclous/tests/test_metrics.py::test_cluster_ratio - tridesclous/tests/test_peeler.py::test_peeler_geometry - tridesclous/tests/test_peeler.py::test_peeler_geometry_cl - tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue - tridesclous/tests/test_peeler.py::test_peeler_several_chunksize - tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor - tridesclous/tests/test_peeler.py::test_export_spikes - tridesclous/tests/test_report.py::test_summary_catalogue_clusters - tridesclous/tests/test_report.py::test_summary_noise - tridesclous/tests/test_report.py::test_summary_after_peeler_clusters - tridesclous/tests/test_report.py::test_generate_report - tridesclous/tests/test_autoparams.py::test_get_auto_params - tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor - tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue - tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude - tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor - tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection - tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps - tridesclous/tests/test_dataio.py::test_DataIO - tridesclous/tests/test_dataio.py::test_DataIO_probes - tridesclous/tests/test_datasets.py::test_download_dataset - tridesclous/tests/test_datasets.py::test_get_dataset - tridesclous/tests/test_datasource.py::test_RawDataSource - tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator - tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines - tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks - tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry - tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines - tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width - tridesclous/tests/test_tools.py::test_fix_prb_file_py2 -) - -python_test() { - local EPYTEST_IGNORE=( - tridesclous/online/tests/* - ) - if use !gui ; then - local EPYTEST_IGNORE+=( - tridesclous/gui/* - ) - fi - epytest -}
