Michael:
> On Mon, 2021-04-05 at 16:10 +0200, k...@aspodata.se wrote:
> > system call failed: Cannot allocate memory
> > Segmentation fault
>
> Is this a low-memory machine?
So, how much memory does R need to build ?
I have:
$ free
total used free shared buff/cache available
Mem: 6103628 1807560 2631444 146376 1664624 3107868
Swap: 8788924 670108 8118816
///
Somewhere in the log it says that something failed to get
a sigaltstack(). Did the R devs anticipate out of memory and sigseg and
tried to handle it ?
> If so, there's no much you can do here
> except set a lower number of jobs in MAKEOPTS for the dev-lang/R build:
>
> https://wiki.gentoo.org/wiki//etc/portage/package.env
I already have (in make.conf):
EMERGE_DEFAULT_OPTS="--jobs 1 ..."
This seems to solved the issue:
# cat /etc/portage/env/j1
MAKEOPTS=-j1
# cat /etc/portage/package.env/R
dev-lang/R j1
> But if you don't think you're running out of RAM, we can keep digging.
> For example you might have some memory limits set in /etc/limits that
> you're hitting.
I don't have an /etc/limits, and /etc/security/limits.conf is just
comments.
# prlimit -d -l -s
RESOURCE DESCRIPTION SOFT HARD UNITS
DATA max data size unlimited unlimited bytes
MEMLOCK max locked-in-memory address space unlimited unlimited bytes
STACK max stack size 8388608 unlimited bytes
Regards,
/Karl Hammar
