-------- Original Message --------
Date: Mon, 12 Jun 2006 16:47:11 +0100
From: Didier Mu-kindemb <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
Hi David,
My name is Didier and I am a Bioinformatics student at Oxford
university. I am writing to seek help with Gromacs. I am doing a
molecular dynamics of a protein using Gromacs, I am getting an error
message and I do not know how to solve it. From tutorial, I can run
pdb2gmx, editconf, and genbox without any error messages but after
grompp I am getting an error message saying "number of coordinates in
coordinate file (1v4_b4em.pdb, 175038) does not match topology
(1v4s.top,0). Have you got any idea how to solve it, please? I am
thinking of editing one of those file but I am sure what sort of
editing need to be done.
I will be glad to hear any comments from you. I am using Gromacs3.3.1
version.
Cheers
Didier
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
