I think you misunderstood my reply. I understood that it is a periodic boundry condition problem and used trjconv. But it writes a trajectory file. How do I make a gro file to input it into next run? I cant even use tpbconv command because trjconv writes a xtc file and I need a trr file for my next run?
---------------------------------------- > Date: Mon, 31 Dec 2007 08:17:15 +1100 > From: [EMAIL PROTECTED] > To: gmx-users@gromacs.org > Subject: Re: [gmx-users] problem in bilayer simulation > > pragya chohan wrote: > > Dear Users > > I am doing membrane simulation alternating nvt and npt during production > > run. After 1250 ps the water from upper leaflet goes towards the lower > > leaflet and a very thin layer of water remains in the upper leaflet. Is > > it a common occurance or am I doing some mistake? > > Probably you are observing an artefact of periodic boundary conditions - > see http://wiki.gromacs.org/index.php/Periodic_Boundary_Conditions for > advice here. > > Mark > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php _________________________________________________________________ Post free property ads on Yello Classifieds now! www.yello.in http://ss1.richmedia.in/recurl.asp?pid=221_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
