> > > I think you misunderstood my reply. > I understood that it is a periodic boundry condition problem and used > trjconv. But it writes a trajectory file. How do I make a gro file to > input it into next run?
Depending on what you're doing, you may not need one. See http://wiki.gromacs.org/index.php/Doing_Restarts. In any case, working out how to do the restart is totally separate from any post-processing you've done for visualization purposes. > I cant even use tpbconv command because trjconv > writes a xtc file and I need a trr file for my next run? First, trjconv will write whatever trajectory file format you ask for, and this behaviour is common to all GROMACS tools. Second, you should be using the .trr output of the last mdrun to prepare the input for the continuations, and not the results of post-processing that output. Mark _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
