Hi
i found out the residues which form H bond but am still not able to get life
time if H bond. The option -lifetime gives t as x and p(t) as y axis. is this
value for all the bonds.
How can i see the lifetime of each bond?
Thanking you
pragya chohan
> Date: Sat, 3 May 2008 02:06:52 +0200> From: [EMAIL PROTECTED]> To:
> gmx-users@gromacs.org> Subject: Re: [gmx-users] using xmp file> > Mark
> Abraham wrote:> > pragya chohan wrote:> >> Dear users> >> > >> I wasted to
> look at H bonding between between a particular residue> >> and rest of the
> system. So I did g_hbond. It created a number of> >> files I want to make a
> table indicating atom of residue> >> participating, atom or residue number of
> Donor atom, lifetime of> >> those bonds to show their significance.> >> > >>
> Can you tell me which files are useful for this purpose? > >> > Yes, but
> first you should be reading "g_hbond -h" and working some> > things out for
> yourself.> >> >> Also please tell me how to visualise xmp files on windows>>
> >> > Google is probably your friend for finding out about viewers for *xpm*>
> > files. The GIMP will certainly work, but it's a heavyweight solution!> >>
> Perhaps the xpm2ps tool will also help to view a ps document, which> should
> be possible with windows ;)> > > > Mark> >
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> http://www.gromacs.org/mailing_lists/users.php> >> > > -- > Florian Dommert>
> Dipl.-Phys.> > Computational and Theoretical Softmatter & Biophysics group> >
> Frankfurt Institute for Advanced Studies> Johann-Wolfgang-Goethe University>
> > Ruth-Moufang-Str. 1> 60438 Frankfurt am Main> > Phone: +49(0)69 / 798 -
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