Am Freitag, 12. September 2008 schrieb sarbani chattopadhyay: > I want to know is there any way to extract the > coordinates of both the protein and counterions from the trajectory while > writing the "pdb" file ie. I don't want the water molecules but only the > protein and the counter ions. > I did not see that option wile trying to generate the pdb files. > Is there any way of doing this?
You can create an index file, containing a union of both groups and then provide this to trjconv. Best Martin _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php