Dear I make the solution box of organic solvent. It is homeogen and mixed properly. It also has a minimum energy. I put one protein in this solution. Before put the protein in the solution I minimimized it also. Now I mixed 2 system which each of them are minimized. After put the protein in the solution I try first to minimized it then run it but unfortunately it crashed. I did not work at all. I also tried to run the system without minimization but it also did not work at all. I changed mdp file ( eg,remove center of mass motion or decrease the temprature,..) but non of them did work.
Thats very nice of you if you guid me what should i do? Thanks Morteza _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
