Dear justin a) if I want to have the steady and hemogen for mix solvent , do I have to use this command (when I made genbox box 16.16.24 before that)? :editconf -f conf.gro -bt dodecahedron -d 0.5 -o box.gro b) I use trjconv -pbc mol -ur compact and then minimize .when I see the output this part in vmd or ngmx and around X-rotate.I will see water in top and tfe in down box and another roatation the box is seemed hemogen ous .is it correct? about distortion ,my mean is"donot have periodicity and hemogenity"
thanks and appreiciate u -- sh-karbalaee _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
