Dear All: I wanted to get the viscosity of my simulated polymer system. From the manual it said that : GROMACS also has a non-equilibrium method for determining the viscosity" (page 123) Does this mean I just need to do a separate non-equilibrium MD run? In terms of mdp file, I just need to add the following options, right? acc_grps: accelerate: cos_acceleration:
My question is: first, how to set the value of cos_acceleration: ? Second, after I finish the run, how can I get the viscosity from the simulation result? Anyone has done this yet? Thank you so much for your answer in advance. -- Yanmei Song Department of Chemical Engineering ASU _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
