On Wed, 2009-06-03 at 00:42 +1000, Mark Abraham wrote: > Nuno Azoia wrote: > > Hello! > > > > Just like Manik Mayur suggested, the problem should be the links: > > Making links may fix the problem of finding executables if that link > location is already in your path, but it won't fix your other > environment variables, or perhaps if you used configure --prefix. > > > Gromacs gives you the possibility to create links to /usr/bin directory > > (ot something similar). If you didn't do that, one of the option is > > trying to run the programs using the full path. Instead of using > > pdb2gmx, try to use /usr/local/gromacs/bin/pdb2gmx. Replace > > "/usr/local/gromacs" with the directory where you install gromacs. If > > you didn't choose anything it probably is /usr/local/gromacs. > > Call "source /path/to/GMXRC", then go do science.
That's what I love the most in this list, always learning something interesting. Thanks. Nuno Azoia > > Mark > > > I hope this can help > > > > Nuno Azoia > > > > On Tue, 2009-06-02 at 12:21 +0530, Samik Bhattacharya wrote: > >> hi,I > >> > >> i am facing a lot of troubles in installing Gromacs in my Redhat > >> machine..I've followed all the instructions given in the manual as > >> well as in the website. ialso have installed fftw,its compiling with > >> no problem. . but whenever i run pdb2gmx or command lke that its > >> giving an error "command not found". a little help regarding this > >> matter will be very encouraging. > >> thankx > >> Shamik > >> > >> > >> > >> ______________________________________________________________________ > >> Explore and discover exciting holidays and getaways with Yahoo! India > >> Travel Click here! > >> _______________________________________________ > >> gmx-users mailing list gmx-users@gromacs.org > >> http://www.gromacs.org/mailman/listinfo/gmx-users > >> Please search the archive at http://www.gromacs.org/search before posting! > >> Please don't post (un)subscribe requests to the list. Use the > >> www interface or send it to gmx-users-requ...@gromacs.org. > >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php