Anirban Ghosh wrote:
Hi ALL,
In previous posts I mentioned the problem I am facing: a portion of my
protein (GPCR in a POPC bilayer) in extending out of the water box in
negative Z-direction, how to extend the water in that direction. I have
gone through the PBC section of the manual. While changing the Z
coordinate value of the last line of the .gro file I am able to extend
the water layer in the positive Z direction. But I am not able to extend
it in the opposite direction. Decreasing the Z coordinate value is not
helping that. How to do this? Any suggestion is welcome.
Increase the z-coordinate.
Regards,
*Anirban Ghosh*
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David.
________________________________________________________________________
David van der Spoel, PhD, Professor of Biology
Dept. of Cell and Molecular Biology, Uppsala University.
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