Hi, What is the difference between increasing in the positive z direction and the negative z direction?
Tsjerk On Thu, Jun 4, 2009 at 4:31 PM, Anirban Ghosh <anirban...@yahoo.co.in> wrote: > Hi ALL, > > In previous posts I mentioned the problem I am facing: a portion of my > protein (GPCR in a POPC bilayer) in extending out of the water box in > negative Z-direction, how to extend the water in that direction. I have gone > through the PBC section of the manual. While changing the Z coordinate value > of the last line of the .gro file I am able to extend the water layer in the > positive Z direction. But I am not able to extend it in the opposite > direction. Decreasing the Z coordinate value is not helping that. How to do > this? Any suggestion is welcome. > > Regards, > > > > > Anirban Ghosh > ________________________________ > Explore and discover exciting holidays and getaways with Yahoo! India Travel > Click here! > _______________________________________________ > gmx-users mailing list gmx-us...@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
