Adam Huffman wrote:
Jussi Lehtola wrote:
On Mon, 2009-07-06 at 11:37 +0100, Adam Huffman wrote:
I've installed several debuginfo packages and when run via gdb the
crash doesn't occur...:
(gdb) r
Starting program: /usr/bin/g_mdrun
warning: "/usr/lib/debug/usr/lib64/atlas/libblas.so.3.0.debug": The
separate debug info file has no debug info
warning: "/usr/lib/debug/usr/lib64/atlas/liblapack.so.3.0.debug": The
separate debug info file has no debug info
[Thread debugging using libthread_db enabled]
then the usage message and
When I run
$ gdb g_mdrun
(gdb) r
I get
(clip)
Program g_mdrun, VERSION 4.0.4
Source code file: ../../../src/gmxlib/gmxfio.c, line: 736
Can not open file:
topol.tpr
(clip)
Program exited with code 0377.
Yes, I see that. At this stage, I just want the program to start
without crashing. At the moment it crashes even without trying to load
any input files, but not when run under gdb.
If you are adventurous you could try to run it through valgrind which
will spot memory errors.
valgrind mdrun [ options ]
You may need to install the valgrind program.
Instead of running
$ gdb g_mdrun [mdrun options]
(gdb) run
you need to run
$ gdb g_mdrun
(gdb) run [mdrun options]
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