Try combining indices with that, use "make_ndx -h". --Omer.

Koby Levy research group,
Weizmann Institute of Science.
FAX: 972-77-444-7905
http://www.weizmann.ac.il/sb/faculty_pages/Levy/


On Wed, Jul 22, 2009 at 18:27, Justin A. Lemkul <jalem...@vt.edu> wrote:

> The trjconv -pbc options were designed to fix this sort of issue.
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