Implicit solvent are still not available in gromacs.
Using 43a1 FF is fine, except with implicit solvent! Or you should
have one compatible with it!
On Apr 28, 2010, at 6:27 PM, Chanchal wrote:
Hi All,
I want to perform MD simulation of a protein in implicit solvent
using gromacs 4.0.7. I looked into the manual but did not get any
information regarding the implicit solvent. Is it avilable in
gromacs? I searched in the mailing list and found someone in older
mail said its not avilable. If it is avilable, could anybody please
give me the mdp option. Is it okay to use 43a1 FF?
Thanks
Chanchal
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