hello Jusitn, Thanks for your reply,, I am sending you the link, so that you can see the changes in the protein, I have specifically shown that part of the protein, where I am seeing changes,
http://picasaweb.google.co.in/sonali11dhindwal/Protein?feat=directlink Yello beeta sheets are of the protein after EM, and magenta are that of the refrence structure, you can see how this time,I am surprised myself that sheets have become longer than the refrence structure. I have corrected that define = -DPOSRES also. and have taken that posres file generated by pdb2gmx.is this the problem of the visualiser I m using, I am using pymol for it Thanks -- Sonali Dhindwal
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