Hello,
I would like to restrain my molecule to a specific position in space. I would
like for certain atoms to lie on the y-axis. To do this I used the following
code/lines in my .top file:
[ position restraints ]
2 1 1000 0 1000 ;
3 1 1000 0 1000 ;
4 1 1000 0 1000 ;
5 1 1000 0 1000 ;
6 1 1000 0 1000 ;
7 1 1000 0 1000 ;
8 1 1000 0 1000 ;
9 1 1000 0 1000 ;
Unfortunately, after minimization my file contained the molecule in the same
position as when the restraints were not applied.
Does anyone know what I am doing wrong?
Thanks in advance,
Abdullah
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