praba vathy wrote:
Hi,
I am using simulation for a membrane protein.
So i have downloaded the dppc.pdb along with it's topology files.
I have used the following steps for the simulation (Based on the link:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/01_pdb2gmx.html).
We have used the commands and steps as described in the above link.
But we have got a fatal error (Atom type C not found) while running this
command,
grompp -f mini.mdp -c dppc128.gro -p topol_dppc.top -o em.tp <http://em.tp>
I cant sort out this problem.
Please anybody help me to sort out this problem.
Awaiting for your valuable replies.
This is a very different error than what you reported before, and since dppc.itp
does not contain atom type "C" the error indicates (once again) that you have
incorrectly constructed the ffG53a6nb_lipid.itp file that is described in the
tutorial. Please start over and follow the instructions closely. If you do so,
you will not get errors about missing atom types.
-Justin
Praba
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
